Sindbad~EG File Manager
<?php
/*
* Licensed under the Apache License, Version 2.0 (the "License"); you may not
* use this file except in compliance with the License. You may obtain a copy of
* the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
* License for the specific language governing permissions and limitations under
* the License.
*/
/**
* Service definition for Genomics (v1).
*
* <p>
* An API to store, process, explore, and share genomic data. It supports
* reference-based alignments, genetic variants, and reference genomes. This API
* provides an implementation of the Global Alliance for Genomics and Health
* (GA4GH) v0.5.1 API as well as several extensions.</p>
*
* <p>
* For more information about this service, see the API
* <a href="" target="_blank">Documentation</a>
* </p>
*
* @author Google, Inc.
*/
class Google_Service_Genomics extends Google_Service
{
/** View and manage your data in Google BigQuery. */
const BIGQUERY =
"https://www.googleapis.com/auth/bigquery";
/** View and manage your data across Google Cloud Platform services. */
const CLOUD_PLATFORM =
"https://www.googleapis.com/auth/cloud-platform";
/** Manage your data in Google Cloud Storage. */
const DEVSTORAGE_READ_WRITE =
"https://www.googleapis.com/auth/devstorage.read_write";
/** View and manage Genomics data. */
const GENOMICS =
"https://www.googleapis.com/auth/genomics";
/** View Genomics data. */
const GENOMICS_READONLY =
"https://www.googleapis.com/auth/genomics.readonly";
public $callsets;
public $datasets;
public $operations;
public $readgroupsets;
public $readgroupsets_coveragebuckets;
public $reads;
public $references;
public $references_bases;
public $referencesets;
public $variants;
public $variantsets;
/**
* Constructs the internal representation of the Genomics service.
*
* @param Google_Client $client
*/
public function __construct(Google_Client $client)
{
parent::__construct($client);
$this->rootUrl = 'https://genomics.googleapis.com/';
$this->servicePath = '';
$this->version = 'v1';
$this->serviceName = 'genomics';
$this->callsets = new Google_Service_Genomics_Callsets_Resource(
$this,
$this->serviceName,
'callsets',
array(
'methods' => array(
'create' => array(
'path' => 'v1/callsets',
'httpMethod' => 'POST',
'parameters' => array(),
),'delete' => array(
'path' => 'v1/callsets/{callSetId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'callSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'v1/callsets/{callSetId}',
'httpMethod' => 'GET',
'parameters' => array(
'callSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'patch' => array(
'path' => 'v1/callsets/{callSetId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'callSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'updateMask' => array(
'location' => 'query',
'type' => 'string',
),
),
),'search' => array(
'path' => 'v1/callsets/search',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->datasets = new Google_Service_Genomics_Datasets_Resource(
$this,
$this->serviceName,
'datasets',
array(
'methods' => array(
'create' => array(
'path' => 'v1/datasets',
'httpMethod' => 'POST',
'parameters' => array(),
),'delete' => array(
'path' => 'v1/datasets/{datasetId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'v1/datasets/{datasetId}',
'httpMethod' => 'GET',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'getIamPolicy' => array(
'path' => 'v1/{+resource}:getIamPolicy',
'httpMethod' => 'POST',
'parameters' => array(
'resource' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'list' => array(
'path' => 'v1/datasets',
'httpMethod' => 'GET',
'parameters' => array(
'projectId' => array(
'location' => 'query',
'type' => 'string',
),
'pageSize' => array(
'location' => 'query',
'type' => 'integer',
),
'pageToken' => array(
'location' => 'query',
'type' => 'string',
),
),
),'patch' => array(
'path' => 'v1/datasets/{datasetId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'updateMask' => array(
'location' => 'query',
'type' => 'string',
),
),
),'setIamPolicy' => array(
'path' => 'v1/{+resource}:setIamPolicy',
'httpMethod' => 'POST',
'parameters' => array(
'resource' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'testIamPermissions' => array(
'path' => 'v1/{+resource}:testIamPermissions',
'httpMethod' => 'POST',
'parameters' => array(
'resource' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'undelete' => array(
'path' => 'v1/datasets/{datasetId}:undelete',
'httpMethod' => 'POST',
'parameters' => array(
'datasetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),
)
)
);
$this->operations = new Google_Service_Genomics_Operations_Resource(
$this,
$this->serviceName,
'operations',
array(
'methods' => array(
'cancel' => array(
'path' => 'v1/{+name}:cancel',
'httpMethod' => 'POST',
'parameters' => array(
'name' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'v1/{+name}',
'httpMethod' => 'GET',
'parameters' => array(
'name' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'list' => array(
'path' => 'v1/{+name}',
'httpMethod' => 'GET',
'parameters' => array(
'name' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'filter' => array(
'location' => 'query',
'type' => 'string',
),
'pageSize' => array(
'location' => 'query',
'type' => 'integer',
),
'pageToken' => array(
'location' => 'query',
'type' => 'string',
),
),
),
)
)
);
$this->readgroupsets = new Google_Service_Genomics_Readgroupsets_Resource(
$this,
$this->serviceName,
'readgroupsets',
array(
'methods' => array(
'delete' => array(
'path' => 'v1/readgroupsets/{readGroupSetId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'readGroupSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'export' => array(
'path' => 'v1/readgroupsets/{readGroupSetId}:export',
'httpMethod' => 'POST',
'parameters' => array(
'readGroupSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'v1/readgroupsets/{readGroupSetId}',
'httpMethod' => 'GET',
'parameters' => array(
'readGroupSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'import' => array(
'path' => 'v1/readgroupsets:import',
'httpMethod' => 'POST',
'parameters' => array(),
),'patch' => array(
'path' => 'v1/readgroupsets/{readGroupSetId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'readGroupSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'updateMask' => array(
'location' => 'query',
'type' => 'string',
),
),
),'search' => array(
'path' => 'v1/readgroupsets/search',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->readgroupsets_coveragebuckets = new Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource(
$this,
$this->serviceName,
'coveragebuckets',
array(
'methods' => array(
'list' => array(
'path' => 'v1/readgroupsets/{readGroupSetId}/coveragebuckets',
'httpMethod' => 'GET',
'parameters' => array(
'readGroupSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'referenceName' => array(
'location' => 'query',
'type' => 'string',
),
'start' => array(
'location' => 'query',
'type' => 'string',
),
'end' => array(
'location' => 'query',
'type' => 'string',
),
'targetBucketWidth' => array(
'location' => 'query',
'type' => 'string',
),
'pageToken' => array(
'location' => 'query',
'type' => 'string',
),
'pageSize' => array(
'location' => 'query',
'type' => 'integer',
),
),
),
)
)
);
$this->reads = new Google_Service_Genomics_Reads_Resource(
$this,
$this->serviceName,
'reads',
array(
'methods' => array(
'search' => array(
'path' => 'v1/reads/search',
'httpMethod' => 'POST',
'parameters' => array(),
),'stream' => array(
'path' => 'v1/reads:stream',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->references = new Google_Service_Genomics_References_Resource(
$this,
$this->serviceName,
'references',
array(
'methods' => array(
'get' => array(
'path' => 'v1/references/{referenceId}',
'httpMethod' => 'GET',
'parameters' => array(
'referenceId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'search' => array(
'path' => 'v1/references/search',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->references_bases = new Google_Service_Genomics_ReferencesBases_Resource(
$this,
$this->serviceName,
'bases',
array(
'methods' => array(
'list' => array(
'path' => 'v1/references/{referenceId}/bases',
'httpMethod' => 'GET',
'parameters' => array(
'referenceId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'start' => array(
'location' => 'query',
'type' => 'string',
),
'end' => array(
'location' => 'query',
'type' => 'string',
),
'pageToken' => array(
'location' => 'query',
'type' => 'string',
),
'pageSize' => array(
'location' => 'query',
'type' => 'integer',
),
),
),
)
)
);
$this->referencesets = new Google_Service_Genomics_Referencesets_Resource(
$this,
$this->serviceName,
'referencesets',
array(
'methods' => array(
'get' => array(
'path' => 'v1/referencesets/{referenceSetId}',
'httpMethod' => 'GET',
'parameters' => array(
'referenceSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'search' => array(
'path' => 'v1/referencesets/search',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->variants = new Google_Service_Genomics_Variants_Resource(
$this,
$this->serviceName,
'variants',
array(
'methods' => array(
'create' => array(
'path' => 'v1/variants',
'httpMethod' => 'POST',
'parameters' => array(),
),'delete' => array(
'path' => 'v1/variants/{variantId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'variantId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'v1/variants/{variantId}',
'httpMethod' => 'GET',
'parameters' => array(
'variantId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'import' => array(
'path' => 'v1/variants:import',
'httpMethod' => 'POST',
'parameters' => array(),
),'patch' => array(
'path' => 'v1/variants/{variantId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'variantId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'updateMask' => array(
'location' => 'query',
'type' => 'string',
),
),
),'search' => array(
'path' => 'v1/variants/search',
'httpMethod' => 'POST',
'parameters' => array(),
),'stream' => array(
'path' => 'v1/variants:stream',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
$this->variantsets = new Google_Service_Genomics_Variantsets_Resource(
$this,
$this->serviceName,
'variantsets',
array(
'methods' => array(
'create' => array(
'path' => 'v1/variantsets',
'httpMethod' => 'POST',
'parameters' => array(),
),'delete' => array(
'path' => 'v1/variantsets/{variantSetId}',
'httpMethod' => 'DELETE',
'parameters' => array(
'variantSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'export' => array(
'path' => 'v1/variantsets/{variantSetId}:export',
'httpMethod' => 'POST',
'parameters' => array(
'variantSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'get' => array(
'path' => 'v1/variantsets/{variantSetId}',
'httpMethod' => 'GET',
'parameters' => array(
'variantSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
),
),'patch' => array(
'path' => 'v1/variantsets/{variantSetId}',
'httpMethod' => 'PATCH',
'parameters' => array(
'variantSetId' => array(
'location' => 'path',
'type' => 'string',
'required' => true,
),
'updateMask' => array(
'location' => 'query',
'type' => 'string',
),
),
),'search' => array(
'path' => 'v1/variantsets/search',
'httpMethod' => 'POST',
'parameters' => array(),
),
)
)
);
}
}
/**
* The "callsets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $callsets = $genomicsService->callsets;
* </code>
*/
class Google_Service_Genomics_Callsets_Resource extends Google_Service_Resource
{
/**
* Creates a new call set. For the definitions of call sets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (callsets.create)
*
* @param Google_CallSet $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_CallSet
*/
public function create(Google_Service_Genomics_CallSet $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Google_Service_Genomics_CallSet");
}
/**
* Deletes a call set. For the definitions of call sets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (callsets.delete)
*
* @param string $callSetId The ID of the call set to be deleted.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Empty
*/
public function delete($callSetId, $optParams = array())
{
$params = array('callSetId' => $callSetId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
}
/**
* Gets a call set by ID. For the definitions of call sets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (callsets.get)
*
* @param string $callSetId The ID of the call set.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_CallSet
*/
public function get($callSetId, $optParams = array())
{
$params = array('callSetId' => $callSetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_CallSet");
}
/**
* Updates a call set. For the definitions of call sets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* This method supports patch semantics. (callsets.patch)
*
* @param string $callSetId The ID of the call set to be updated.
* @param Google_CallSet $postBody
* @param array $optParams Optional parameters.
*
* @opt_param string updateMask An optional mask specifying which fields to
* update. At this time, the only mutable field is name. The only acceptable
* value is "name". If unspecified, all mutable fields will be updated.
* @return Google_Service_Genomics_CallSet
*/
public function patch($callSetId, Google_Service_Genomics_CallSet $postBody, $optParams = array())
{
$params = array('callSetId' => $callSetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Google_Service_Genomics_CallSet");
}
/**
* Gets a list of call sets matching the criteria. For the definitions of call
* sets and other genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* Implements [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schema
* s/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
* (callsets.search)
*
* @param Google_SearchCallSetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_SearchCallSetsResponse
*/
public function search(Google_Service_Genomics_SearchCallSetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Google_Service_Genomics_SearchCallSetsResponse");
}
}
/**
* The "datasets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $datasets = $genomicsService->datasets;
* </code>
*/
class Google_Service_Genomics_Datasets_Resource extends Google_Service_Resource
{
/**
* Creates a new dataset. For the definitions of datasets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (datasets.create)
*
* @param Google_Dataset $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Dataset
*/
public function create(Google_Service_Genomics_Dataset $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Google_Service_Genomics_Dataset");
}
/**
* Deletes a dataset. For the definitions of datasets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (datasets.delete)
*
* @param string $datasetId The ID of the dataset to be deleted.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Empty
*/
public function delete($datasetId, $optParams = array())
{
$params = array('datasetId' => $datasetId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
}
/**
* Gets a dataset by ID. For the definitions of datasets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (datasets.get)
*
* @param string $datasetId The ID of the dataset.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Dataset
*/
public function get($datasetId, $optParams = array())
{
$params = array('datasetId' => $datasetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_Dataset");
}
/**
* Gets the access control policy for the dataset. This is empty if the policy
* or resource does not exist. See Getting a Policy for more information. For
* the definitions of datasets and other genomics resources, see [Fundamentals
* of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
* genomics) (datasets.getIamPolicy)
*
* @param string $resource REQUIRED: The resource for which policy is being
* specified. Format is `datasets/`.
* @param Google_GetIamPolicyRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Policy
*/
public function getIamPolicy($resource, Google_Service_Genomics_GetIamPolicyRequest $postBody, $optParams = array())
{
$params = array('resource' => $resource, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('getIamPolicy', array($params), "Google_Service_Genomics_Policy");
}
/**
* Lists datasets within a project. For the definitions of datasets and other
* genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (datasets.listDatasets)
*
* @param array $optParams Optional parameters.
*
* @opt_param string projectId Required. The project to list datasets for.
* @opt_param int pageSize The maximum number of results to return in a single
* page. If unspecified, defaults to 50. The maximum value is 1024.
* @opt_param string pageToken The continuation token, which is used to page
* through large result sets. To get the next page of results, set this
* parameter to the value of `nextPageToken` from the previous response.
* @return Google_Service_Genomics_ListDatasetsResponse
*/
public function listDatasets($optParams = array())
{
$params = array();
$params = array_merge($params, $optParams);
return $this->call('list', array($params), "Google_Service_Genomics_ListDatasetsResponse");
}
/**
* Updates a dataset. For the definitions of datasets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* This method supports patch semantics. (datasets.patch)
*
* @param string $datasetId The ID of the dataset to be updated.
* @param Google_Dataset $postBody
* @param array $optParams Optional parameters.
*
* @opt_param string updateMask An optional mask specifying which fields to
* update. At this time, the only mutable field is name. The only acceptable
* value is "name". If unspecified, all mutable fields will be updated.
* @return Google_Service_Genomics_Dataset
*/
public function patch($datasetId, Google_Service_Genomics_Dataset $postBody, $optParams = array())
{
$params = array('datasetId' => $datasetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Google_Service_Genomics_Dataset");
}
/**
* Sets the access control policy on the specified dataset. Replaces any
* existing policy. For the definitions of datasets and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* See Setting a Policy for more information. (datasets.setIamPolicy)
*
* @param string $resource REQUIRED: The resource for which policy is being
* specified. Format is `datasets/`.
* @param Google_SetIamPolicyRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Policy
*/
public function setIamPolicy($resource, Google_Service_Genomics_SetIamPolicyRequest $postBody, $optParams = array())
{
$params = array('resource' => $resource, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('setIamPolicy', array($params), "Google_Service_Genomics_Policy");
}
/**
* Returns permissions that a caller has on the specified resource. See Testing
* Permissions for more information. For the definitions of datasets and other
* genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (datasets.testIamPermissions)
*
* @param string $resource REQUIRED: The resource for which policy is being
* specified. Format is `datasets/`.
* @param Google_TestIamPermissionsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_TestIamPermissionsResponse
*/
public function testIamPermissions($resource, Google_Service_Genomics_TestIamPermissionsRequest $postBody, $optParams = array())
{
$params = array('resource' => $resource, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('testIamPermissions', array($params), "Google_Service_Genomics_TestIamPermissionsResponse");
}
/**
* Undeletes a dataset by restoring a dataset which was deleted via this API.
* For the definitions of datasets and other genomics resources, see
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics
* /fundamentals-of-google-genomics) This operation is only possible for a week
* after the deletion occurred. (datasets.undelete)
*
* @param string $datasetId The ID of the dataset to be undeleted.
* @param Google_UndeleteDatasetRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Dataset
*/
public function undelete($datasetId, Google_Service_Genomics_UndeleteDatasetRequest $postBody, $optParams = array())
{
$params = array('datasetId' => $datasetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('undelete', array($params), "Google_Service_Genomics_Dataset");
}
}
/**
* The "operations" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $operations = $genomicsService->operations;
* </code>
*/
class Google_Service_Genomics_Operations_Resource extends Google_Service_Resource
{
/**
* Starts asynchronous cancellation on a long-running operation. The server
* makes a best effort to cancel the operation, but success is not guaranteed.
* Clients may use Operations.GetOperation or Operations.ListOperations to check
* whether the cancellation succeeded or the operation completed despite
* cancellation. (operations.cancel)
*
* @param string $name The name of the operation resource to be cancelled.
* @param Google_CancelOperationRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Empty
*/
public function cancel($name, Google_Service_Genomics_CancelOperationRequest $postBody, $optParams = array())
{
$params = array('name' => $name, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('cancel', array($params), "Google_Service_Genomics_Empty");
}
/**
* Gets the latest state of a long-running operation. Clients can use this
* method to poll the operation result at intervals as recommended by the API
* service. (operations.get)
*
* @param string $name The name of the operation resource.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Operation
*/
public function get($name, $optParams = array())
{
$params = array('name' => $name);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_Operation");
}
/**
* Lists operations that match the specified filter in the request.
* (operations.listOperations)
*
* @param string $name The name of the operation collection.
* @param array $optParams Optional parameters.
*
* @opt_param string filter A string for filtering Operations. The following
* filter fields are supported: * projectId: Required. Corresponds to
* OperationMetadata.projectId. * createTime: The time this job was created, in
* seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use
* `>=` and/or `= 1432140000` * `projectId = my-project AND createTime >=
* 1432140000 AND createTime <= 1432150000 AND status = RUNNING`
* @opt_param int pageSize The maximum number of results to return. If
* unspecified, defaults to 256. The maximum value is 2048.
* @opt_param string pageToken The standard list page token.
* @return Google_Service_Genomics_ListOperationsResponse
*/
public function listOperations($name, $optParams = array())
{
$params = array('name' => $name);
$params = array_merge($params, $optParams);
return $this->call('list', array($params), "Google_Service_Genomics_ListOperationsResponse");
}
}
/**
* The "readgroupsets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $readgroupsets = $genomicsService->readgroupsets;
* </code>
*/
class Google_Service_Genomics_Readgroupsets_Resource extends Google_Service_Resource
{
/**
* Deletes a read group set. For the definitions of read group sets and other
* genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (readgroupsets.delete)
*
* @param string $readGroupSetId The ID of the read group set to be deleted. The
* caller must have WRITE permissions to the dataset associated with this read
* group set.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Empty
*/
public function delete($readGroupSetId, $optParams = array())
{
$params = array('readGroupSetId' => $readGroupSetId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
}
/**
* Exports a read group set to a BAM file in Google Cloud Storage. For the
* definitions of read group sets and other genomics resources, see
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics
* /fundamentals-of-google-genomics) Note that currently there may be some
* differences between exported BAM files and the original BAM file at the time
* of import. See
* [ImportReadGroupSets](google.genomics.v1.ReadServiceV1.ImportReadGroupSets)
* for caveats. (readgroupsets.export)
*
* @param string $readGroupSetId Required. The ID of the read group set to
* export. The caller must have READ access to this read group set.
* @param Google_ExportReadGroupSetRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Operation
*/
public function export($readGroupSetId, Google_Service_Genomics_ExportReadGroupSetRequest $postBody, $optParams = array())
{
$params = array('readGroupSetId' => $readGroupSetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('export', array($params), "Google_Service_Genomics_Operation");
}
/**
* Gets a read group set by ID. For the definitions of read group sets and other
* genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (readgroupsets.get)
*
* @param string $readGroupSetId The ID of the read group set.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_ReadGroupSet
*/
public function get($readGroupSetId, $optParams = array())
{
$params = array('readGroupSetId' => $readGroupSetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_ReadGroupSet");
}
/**
* Creates read group sets by asynchronously importing the provided information.
* For the definitions of read group sets and other genomics resources, see
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics
* /fundamentals-of-google-genomics) The caller must have WRITE permissions to
* the dataset. ## Notes on [BAM](https://samtools.github.io/hts-
* specs/SAMv1.pdf) import - Tags will be converted to strings - tag types are
* not preserved - Comments (`@CO`) in the input file header will not be
* preserved - Original header order of references (`@SQ`) will not be preserved
* - Any reverse stranded unmapped reads will be reverse complemented, and their
* qualities (also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped
* reads will be stripped of positional information (reference name and
* position) (readgroupsets.import)
*
* @param Google_ImportReadGroupSetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Operation
*/
public function import(Google_Service_Genomics_ImportReadGroupSetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('import', array($params), "Google_Service_Genomics_Operation");
}
/**
* Updates a read group set. For the definitions of read group sets and other
* genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* This method supports patch semantics. (readgroupsets.patch)
*
* @param string $readGroupSetId The ID of the read group set to be updated. The
* caller must have WRITE permissions to the dataset associated with this read
* group set.
* @param Google_ReadGroupSet $postBody
* @param array $optParams Optional parameters.
*
* @opt_param string updateMask An optional mask specifying which fields to
* update. Supported fields: * name. * referenceSetId. Leaving `updateMask`
* unset is equivalent to specifying all mutable fields.
* @return Google_Service_Genomics_ReadGroupSet
*/
public function patch($readGroupSetId, Google_Service_Genomics_ReadGroupSet $postBody, $optParams = array())
{
$params = array('readGroupSetId' => $readGroupSetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Google_Service_Genomics_ReadGroupSet");
}
/**
* Searches for read group sets matching the criteria. For the definitions of
* read group sets and other genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* Implements [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/s
* chemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
* (readgroupsets.search)
*
* @param Google_SearchReadGroupSetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_SearchReadGroupSetsResponse
*/
public function search(Google_Service_Genomics_SearchReadGroupSetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Google_Service_Genomics_SearchReadGroupSetsResponse");
}
}
/**
* The "coveragebuckets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $coveragebuckets = $genomicsService->coveragebuckets;
* </code>
*/
class Google_Service_Genomics_ReadgroupsetsCoveragebuckets_Resource extends Google_Service_Resource
{
/**
* Lists fixed width coverage buckets for a read group set, each of which
* correspond to a range of a reference sequence. Each bucket summarizes
* coverage information across its corresponding genomic range. For the
* definitions of read group sets and other genomics resources, see
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics
* /fundamentals-of-google-genomics) Coverage is defined as the number of reads
* which are aligned to a given base in the reference sequence. Coverage buckets
* are available at several precomputed bucket widths, enabling retrieval of
* various coverage 'zoom levels'. The caller must have READ permissions for the
* target read group set. (coveragebuckets.listReadgroupsetsCoveragebuckets)
*
* @param string $readGroupSetId Required. The ID of the read group set over
* which coverage is requested.
* @param array $optParams Optional parameters.
*
* @opt_param string referenceName The name of the reference to query, within
* the reference set associated with this query. Optional.
* @opt_param string start The start position of the range on the reference,
* 0-based inclusive. If specified, `referenceName` must also be specified.
* Defaults to 0.
* @opt_param string end The end position of the range on the reference, 0-based
* exclusive. If specified, `referenceName` must also be specified. If unset or
* 0, defaults to the length of the reference.
* @opt_param string targetBucketWidth The desired width of each reported
* coverage bucket in base pairs. This will be rounded down to the nearest
* precomputed bucket width; the value of which is returned as `bucketWidth` in
* the response. Defaults to infinity (each bucket spans an entire reference
* sequence) or the length of the target range, if specified. The smallest
* precomputed `bucketWidth` is currently 2048 base pairs; this is subject to
* change.
* @opt_param string pageToken The continuation token, which is used to page
* through large result sets. To get the next page of results, set this
* parameter to the value of `nextPageToken` from the previous response.
* @opt_param int pageSize The maximum number of results to return in a single
* page. If unspecified, defaults to 1024. The maximum value is 2048.
* @return Google_Service_Genomics_ListCoverageBucketsResponse
*/
public function listReadgroupsetsCoveragebuckets($readGroupSetId, $optParams = array())
{
$params = array('readGroupSetId' => $readGroupSetId);
$params = array_merge($params, $optParams);
return $this->call('list', array($params), "Google_Service_Genomics_ListCoverageBucketsResponse");
}
}
/**
* The "reads" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $reads = $genomicsService->reads;
* </code>
*/
class Google_Service_Genomics_Reads_Resource extends Google_Service_Resource
{
/**
* Gets a list of reads for one or more read group sets. For the definitions of
* read group sets and other genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* Reads search operates over a genomic coordinate space of reference sequence &
* position defined over the reference sequences to which the requested read
* group sets are aligned. If a target positional range is specified, search
* returns all reads whose alignment to the reference genome overlap the range.
* A query which specifies only read group set IDs yields all reads in those
* read group sets, including unmapped reads. All reads returned (including
* reads on subsequent pages) are ordered by genomic coordinate (by reference
* sequence, then position). Reads with equivalent genomic coordinates are
* returned in an unspecified order. This order is consistent, such that two
* queries for the same content (regardless of page size) yield reads in the
* same order across their respective streams of paginated responses. Implements
* [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/
* src/main/resources/avro/readmethods.avdl#L85). (reads.search)
*
* @param Google_SearchReadsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_SearchReadsResponse
*/
public function search(Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Google_Service_Genomics_SearchReadsResponse");
}
/**
* Returns a stream of all the reads matching the search request, ordered by
* reference name, position, and ID. (reads.stream)
*
* @param Google_StreamReadsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_StreamReadsResponse
*/
public function stream(Google_Service_Genomics_StreamReadsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('stream', array($params), "Google_Service_Genomics_StreamReadsResponse");
}
}
/**
* The "references" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $references = $genomicsService->references;
* </code>
*/
class Google_Service_Genomics_References_Resource extends Google_Service_Resource
{
/**
* Gets a reference. For the definitions of references and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* Implements [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/
* blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
* (references.get)
*
* @param string $referenceId The ID of the reference.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Reference
*/
public function get($referenceId, $optParams = array())
{
$params = array('referenceId' => $referenceId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_Reference");
}
/**
* Searches for references which match the given criteria. For the definitions
* of references and other genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* Implements [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/sche
* mas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
* (references.search)
*
* @param Google_SearchReferencesRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_SearchReferencesResponse
*/
public function search(Google_Service_Genomics_SearchReferencesRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Google_Service_Genomics_SearchReferencesResponse");
}
}
/**
* The "bases" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $bases = $genomicsService->bases;
* </code>
*/
class Google_Service_Genomics_ReferencesBases_Resource extends Google_Service_Resource
{
/**
* Lists the bases in a reference, optionally restricted to a range. For the
* definitions of references and other genomics resources, see [Fundamentals of
* Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
* genomics) Implements [GlobalAllianceApi.getReferenceBases](https://github.com
* /ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221
* ). (bases.listReferencesBases)
*
* @param string $referenceId The ID of the reference.
* @param array $optParams Optional parameters.
*
* @opt_param string start The start position (0-based) of this query. Defaults
* to 0.
* @opt_param string end The end position (0-based, exclusive) of this query.
* Defaults to the length of this reference.
* @opt_param string pageToken The continuation token, which is used to page
* through large result sets. To get the next page of results, set this
* parameter to the value of `nextPageToken` from the previous response.
* @opt_param int pageSize The maximum number of bases to return in a single
* page. If unspecified, defaults to 200Kbp (kilo base pairs). The maximum value
* is 10Mbp (mega base pairs).
* @return Google_Service_Genomics_ListBasesResponse
*/
public function listReferencesBases($referenceId, $optParams = array())
{
$params = array('referenceId' => $referenceId);
$params = array_merge($params, $optParams);
return $this->call('list', array($params), "Google_Service_Genomics_ListBasesResponse");
}
}
/**
* The "referencesets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $referencesets = $genomicsService->referencesets;
* </code>
*/
class Google_Service_Genomics_Referencesets_Resource extends Google_Service_Resource
{
/**
* Gets a reference set. For the definitions of references and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* Implements [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schem
* as/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
* (referencesets.get)
*
* @param string $referenceSetId The ID of the reference set.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_ReferenceSet
*/
public function get($referenceSetId, $optParams = array())
{
$params = array('referenceSetId' => $referenceSetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_ReferenceSet");
}
/**
* Searches for reference sets which match the given criteria. For the
* definitions of references and other genomics resources, see [Fundamentals of
* Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
* genomics) Implements [GlobalAllianceApi.searchReferenceSets](https://github.c
* om/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L7
* 1) (referencesets.search)
*
* @param Google_SearchReferenceSetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_SearchReferenceSetsResponse
*/
public function search(Google_Service_Genomics_SearchReferenceSetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Google_Service_Genomics_SearchReferenceSetsResponse");
}
}
/**
* The "variants" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $variants = $genomicsService->variants;
* </code>
*/
class Google_Service_Genomics_Variants_Resource extends Google_Service_Resource
{
/**
* Creates a new variant. For the definitions of variants and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (variants.create)
*
* @param Google_Variant $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Variant
*/
public function create(Google_Service_Genomics_Variant $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Google_Service_Genomics_Variant");
}
/**
* Deletes a variant. For the definitions of variants and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (variants.delete)
*
* @param string $variantId The ID of the variant to be deleted.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Empty
*/
public function delete($variantId, $optParams = array())
{
$params = array('variantId' => $variantId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
}
/**
* Gets a variant by ID. For the definitions of variants and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (variants.get)
*
* @param string $variantId The ID of the variant.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Variant
*/
public function get($variantId, $optParams = array())
{
$params = array('variantId' => $variantId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_Variant");
}
/**
* Creates variant data by asynchronously importing the provided information.
* For the definitions of variant sets and other genomics resources, see
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics
* /fundamentals-of-google-genomics) The variants for import will be merged with
* any existing variant that matches its reference sequence, start, end,
* reference bases, and alternative bases. If no such variant exists, a new one
* will be created. When variants are merged, the call information from the new
* variant is added to the existing variant, and other fields (such as key/value
* pairs) are discarded. In particular, this means for merged VCF variants that
* have conflicting INFO fields, some data will be arbitrarily discarded. As a
* special case, for single-sample VCF files, QUAL and FILTER fields will be
* moved to the call level; these are sometimes interpreted in a call-specific
* context. Imported VCF headers are appended to the metadata already in a
* variant set. (variants.import)
*
* @param Google_ImportVariantsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Operation
*/
public function import(Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('import', array($params), "Google_Service_Genomics_Operation");
}
/**
* Updates a variant. For the definitions of variants and other genomics
* resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* This method supports patch semantics. Returns the modified variant without
* its calls. (variants.patch)
*
* @param string $variantId The ID of the variant to be updated.
* @param Google_Variant $postBody
* @param array $optParams Optional parameters.
*
* @opt_param string updateMask An optional mask specifying which fields to
* update. At this time, mutable fields are names and info. Acceptable values
* are "names" and "info". If unspecified, all mutable fields will be updated.
* @return Google_Service_Genomics_Variant
*/
public function patch($variantId, Google_Service_Genomics_Variant $postBody, $optParams = array())
{
$params = array('variantId' => $variantId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Google_Service_Genomics_Variant");
}
/**
* Gets a list of variants matching the criteria. For the definitions of
* variants and other genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* Implements [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schema
* s/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).
* (variants.search)
*
* @param Google_SearchVariantsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_SearchVariantsResponse
*/
public function search(Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Google_Service_Genomics_SearchVariantsResponse");
}
/**
* Returns a stream of all the variants matching the search request, ordered by
* reference name, position, and ID. (variants.stream)
*
* @param Google_StreamVariantsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_StreamVariantsResponse
*/
public function stream(Google_Service_Genomics_StreamVariantsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('stream', array($params), "Google_Service_Genomics_StreamVariantsResponse");
}
}
/**
* The "variantsets" collection of methods.
* Typical usage is:
* <code>
* $genomicsService = new Google_Service_Genomics(...);
* $variantsets = $genomicsService->variantsets;
* </code>
*/
class Google_Service_Genomics_Variantsets_Resource extends Google_Service_Resource
{
/**
* Creates a new variant set. For the definitions of variant sets and other
* genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* The provided variant set must have a valid `datasetId` set - all other fields
* are optional. Note that the `id` field will be ignored, as this is assigned
* by the server. (variantsets.create)
*
* @param Google_VariantSet $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_VariantSet
*/
public function create(Google_Service_Genomics_VariantSet $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('create', array($params), "Google_Service_Genomics_VariantSet");
}
/**
* Deletes the contents of a variant set. The variant set object is not deleted.
* For the definitions of variant sets and other genomics resources, see
* [Fundamentals of Google Genomics](https://cloud.google.com/genomics
* /fundamentals-of-google-genomics) (variantsets.delete)
*
* @param string $variantSetId The ID of the variant set to be deleted.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Empty
*/
public function delete($variantSetId, $optParams = array())
{
$params = array('variantSetId' => $variantSetId);
$params = array_merge($params, $optParams);
return $this->call('delete', array($params), "Google_Service_Genomics_Empty");
}
/**
* Exports variant set data to an external destination. For the definitions of
* variant sets and other genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (variantsets.export)
*
* @param string $variantSetId Required. The ID of the variant set that contains
* variant data which should be exported. The caller must have READ access to
* this variant set.
* @param Google_ExportVariantSetRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_Operation
*/
public function export($variantSetId, Google_Service_Genomics_ExportVariantSetRequest $postBody, $optParams = array())
{
$params = array('variantSetId' => $variantSetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('export', array($params), "Google_Service_Genomics_Operation");
}
/**
* Gets a variant set by ID. For the definitions of variant sets and other
* genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (variantsets.get)
*
* @param string $variantSetId Required. The ID of the variant set.
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_VariantSet
*/
public function get($variantSetId, $optParams = array())
{
$params = array('variantSetId' => $variantSetId);
$params = array_merge($params, $optParams);
return $this->call('get', array($params), "Google_Service_Genomics_VariantSet");
}
/**
* Updates a variant set using patch semantics. For the definitions of variant
* sets and other genomics resources, see [Fundamentals of Google
* Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
* (variantsets.patch)
*
* @param string $variantSetId The ID of the variant to be updated (must already
* exist).
* @param Google_VariantSet $postBody
* @param array $optParams Optional parameters.
*
* @opt_param string updateMask An optional mask specifying which fields to
* update. Supported fields: * metadata. Leaving `updateMask` unset is
* equivalent to specifying all mutable fields.
* @return Google_Service_Genomics_VariantSet
*/
public function patch($variantSetId, Google_Service_Genomics_VariantSet $postBody, $optParams = array())
{
$params = array('variantSetId' => $variantSetId, 'postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('patch', array($params), "Google_Service_Genomics_VariantSet");
}
/**
* Returns a list of all variant sets matching search criteria. For the
* definitions of variant sets and other genomics resources, see [Fundamentals
* of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
* genomics) Implements [GlobalAllianceApi.searchVariantSets](https://github.com
* /ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
* (variantsets.search)
*
* @param Google_SearchVariantSetsRequest $postBody
* @param array $optParams Optional parameters.
* @return Google_Service_Genomics_SearchVariantSetsResponse
*/
public function search(Google_Service_Genomics_SearchVariantSetsRequest $postBody, $optParams = array())
{
$params = array('postBody' => $postBody);
$params = array_merge($params, $optParams);
return $this->call('search', array($params), "Google_Service_Genomics_SearchVariantSetsResponse");
}
}
class Google_Service_Genomics_Binding extends Google_Collection
{
protected $collection_key = 'members';
protected $internal_gapi_mappings = array(
);
public $members;
public $role;
public function setMembers($members)
{
$this->members = $members;
}
public function getMembers()
{
return $this->members;
}
public function setRole($role)
{
$this->role = $role;
}
public function getRole()
{
return $this->role;
}
}
class Google_Service_Genomics_CallSet extends Google_Collection
{
protected $collection_key = 'variantSetIds';
protected $internal_gapi_mappings = array(
);
public $created;
public $id;
public $info;
public $name;
public $sampleId;
public $variantSetIds;
public function setCreated($created)
{
$this->created = $created;
}
public function getCreated()
{
return $this->created;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setSampleId($sampleId)
{
$this->sampleId = $sampleId;
}
public function getSampleId()
{
return $this->sampleId;
}
public function setVariantSetIds($variantSetIds)
{
$this->variantSetIds = $variantSetIds;
}
public function getVariantSetIds()
{
return $this->variantSetIds;
}
}
class Google_Service_Genomics_CancelOperationRequest extends Google_Model
{
}
class Google_Service_Genomics_CigarUnit extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $operation;
public $operationLength;
public $referenceSequence;
public function setOperation($operation)
{
$this->operation = $operation;
}
public function getOperation()
{
return $this->operation;
}
public function setOperationLength($operationLength)
{
$this->operationLength = $operationLength;
}
public function getOperationLength()
{
return $this->operationLength;
}
public function setReferenceSequence($referenceSequence)
{
$this->referenceSequence = $referenceSequence;
}
public function getReferenceSequence()
{
return $this->referenceSequence;
}
}
class Google_Service_Genomics_CloudAuditOptions extends Google_Model
{
}
class Google_Service_Genomics_Condition extends Google_Collection
{
protected $collection_key = 'values';
protected $internal_gapi_mappings = array(
);
public $iam;
public $op;
public $svc;
public $sys;
public $value;
public $values;
public function setIam($iam)
{
$this->iam = $iam;
}
public function getIam()
{
return $this->iam;
}
public function setOp($op)
{
$this->op = $op;
}
public function getOp()
{
return $this->op;
}
public function setSvc($svc)
{
$this->svc = $svc;
}
public function getSvc()
{
return $this->svc;
}
public function setSys($sys)
{
$this->sys = $sys;
}
public function getSys()
{
return $this->sys;
}
public function setValue($value)
{
$this->value = $value;
}
public function getValue()
{
return $this->value;
}
public function setValues($values)
{
$this->values = $values;
}
public function getValues()
{
return $this->values;
}
}
class Google_Service_Genomics_CounterOptions extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $field;
public $metric;
public function setField($field)
{
$this->field = $field;
}
public function getField()
{
return $this->field;
}
public function setMetric($metric)
{
$this->metric = $metric;
}
public function getMetric()
{
return $this->metric;
}
}
class Google_Service_Genomics_CoverageBucket extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $meanCoverage;
protected $rangeType = 'Google_Service_Genomics_Range';
protected $rangeDataType = '';
public function setMeanCoverage($meanCoverage)
{
$this->meanCoverage = $meanCoverage;
}
public function getMeanCoverage()
{
return $this->meanCoverage;
}
public function setRange(Google_Service_Genomics_Range $range)
{
$this->range = $range;
}
public function getRange()
{
return $this->range;
}
}
class Google_Service_Genomics_DataAccessOptions extends Google_Model
{
}
class Google_Service_Genomics_Dataset extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $createTime;
public $id;
public $name;
public $projectId;
public function setCreateTime($createTime)
{
$this->createTime = $createTime;
}
public function getCreateTime()
{
return $this->createTime;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
}
class Google_Service_Genomics_Empty extends Google_Model
{
}
class Google_Service_Genomics_Experiment extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $instrumentModel;
public $libraryId;
public $platformUnit;
public $sequencingCenter;
public function setInstrumentModel($instrumentModel)
{
$this->instrumentModel = $instrumentModel;
}
public function getInstrumentModel()
{
return $this->instrumentModel;
}
public function setLibraryId($libraryId)
{
$this->libraryId = $libraryId;
}
public function getLibraryId()
{
return $this->libraryId;
}
public function setPlatformUnit($platformUnit)
{
$this->platformUnit = $platformUnit;
}
public function getPlatformUnit()
{
return $this->platformUnit;
}
public function setSequencingCenter($sequencingCenter)
{
$this->sequencingCenter = $sequencingCenter;
}
public function getSequencingCenter()
{
return $this->sequencingCenter;
}
}
class Google_Service_Genomics_ExportReadGroupSetRequest extends Google_Collection
{
protected $collection_key = 'referenceNames';
protected $internal_gapi_mappings = array(
);
public $exportUri;
public $projectId;
public $referenceNames;
public function setExportUri($exportUri)
{
$this->exportUri = $exportUri;
}
public function getExportUri()
{
return $this->exportUri;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setReferenceNames($referenceNames)
{
$this->referenceNames = $referenceNames;
}
public function getReferenceNames()
{
return $this->referenceNames;
}
}
class Google_Service_Genomics_ExportVariantSetRequest extends Google_Collection
{
protected $collection_key = 'callSetIds';
protected $internal_gapi_mappings = array(
);
public $bigqueryDataset;
public $bigqueryTable;
public $callSetIds;
public $format;
public $projectId;
public function setBigqueryDataset($bigqueryDataset)
{
$this->bigqueryDataset = $bigqueryDataset;
}
public function getBigqueryDataset()
{
return $this->bigqueryDataset;
}
public function setBigqueryTable($bigqueryTable)
{
$this->bigqueryTable = $bigqueryTable;
}
public function getBigqueryTable()
{
return $this->bigqueryTable;
}
public function setCallSetIds($callSetIds)
{
$this->callSetIds = $callSetIds;
}
public function getCallSetIds()
{
return $this->callSetIds;
}
public function setFormat($format)
{
$this->format = $format;
}
public function getFormat()
{
return $this->format;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
}
class Google_Service_Genomics_GetIamPolicyRequest extends Google_Model
{
}
class Google_Service_Genomics_ImportReadGroupSetsRequest extends Google_Collection
{
protected $collection_key = 'sourceUris';
protected $internal_gapi_mappings = array(
);
public $datasetId;
public $partitionStrategy;
public $referenceSetId;
public $sourceUris;
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setPartitionStrategy($partitionStrategy)
{
$this->partitionStrategy = $partitionStrategy;
}
public function getPartitionStrategy()
{
return $this->partitionStrategy;
}
public function setReferenceSetId($referenceSetId)
{
$this->referenceSetId = $referenceSetId;
}
public function getReferenceSetId()
{
return $this->referenceSetId;
}
public function setSourceUris($sourceUris)
{
$this->sourceUris = $sourceUris;
}
public function getSourceUris()
{
return $this->sourceUris;
}
}
class Google_Service_Genomics_ImportReadGroupSetsResponse extends Google_Collection
{
protected $collection_key = 'readGroupSetIds';
protected $internal_gapi_mappings = array(
);
public $readGroupSetIds;
public function setReadGroupSetIds($readGroupSetIds)
{
$this->readGroupSetIds = $readGroupSetIds;
}
public function getReadGroupSetIds()
{
return $this->readGroupSetIds;
}
}
class Google_Service_Genomics_ImportVariantsRequest extends Google_Collection
{
protected $collection_key = 'sourceUris';
protected $internal_gapi_mappings = array(
);
public $format;
public $normalizeReferenceNames;
public $sourceUris;
public $variantSetId;
public function setFormat($format)
{
$this->format = $format;
}
public function getFormat()
{
return $this->format;
}
public function setNormalizeReferenceNames($normalizeReferenceNames)
{
$this->normalizeReferenceNames = $normalizeReferenceNames;
}
public function getNormalizeReferenceNames()
{
return $this->normalizeReferenceNames;
}
public function setSourceUris($sourceUris)
{
$this->sourceUris = $sourceUris;
}
public function getSourceUris()
{
return $this->sourceUris;
}
public function setVariantSetId($variantSetId)
{
$this->variantSetId = $variantSetId;
}
public function getVariantSetId()
{
return $this->variantSetId;
}
}
class Google_Service_Genomics_ImportVariantsResponse extends Google_Collection
{
protected $collection_key = 'callSetIds';
protected $internal_gapi_mappings = array(
);
public $callSetIds;
public function setCallSetIds($callSetIds)
{
$this->callSetIds = $callSetIds;
}
public function getCallSetIds()
{
return $this->callSetIds;
}
}
class Google_Service_Genomics_LinearAlignment extends Google_Collection
{
protected $collection_key = 'cigar';
protected $internal_gapi_mappings = array(
);
protected $cigarType = 'Google_Service_Genomics_CigarUnit';
protected $cigarDataType = 'array';
public $mappingQuality;
protected $positionType = 'Google_Service_Genomics_Position';
protected $positionDataType = '';
public function setCigar($cigar)
{
$this->cigar = $cigar;
}
public function getCigar()
{
return $this->cigar;
}
public function setMappingQuality($mappingQuality)
{
$this->mappingQuality = $mappingQuality;
}
public function getMappingQuality()
{
return $this->mappingQuality;
}
public function setPosition(Google_Service_Genomics_Position $position)
{
$this->position = $position;
}
public function getPosition()
{
return $this->position;
}
}
class Google_Service_Genomics_ListBasesResponse extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $nextPageToken;
public $offset;
public $sequence;
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setOffset($offset)
{
$this->offset = $offset;
}
public function getOffset()
{
return $this->offset;
}
public function setSequence($sequence)
{
$this->sequence = $sequence;
}
public function getSequence()
{
return $this->sequence;
}
}
class Google_Service_Genomics_ListCoverageBucketsResponse extends Google_Collection
{
protected $collection_key = 'coverageBuckets';
protected $internal_gapi_mappings = array(
);
public $bucketWidth;
protected $coverageBucketsType = 'Google_Service_Genomics_CoverageBucket';
protected $coverageBucketsDataType = 'array';
public $nextPageToken;
public function setBucketWidth($bucketWidth)
{
$this->bucketWidth = $bucketWidth;
}
public function getBucketWidth()
{
return $this->bucketWidth;
}
public function setCoverageBuckets($coverageBuckets)
{
$this->coverageBuckets = $coverageBuckets;
}
public function getCoverageBuckets()
{
return $this->coverageBuckets;
}
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
}
class Google_Service_Genomics_ListDatasetsResponse extends Google_Collection
{
protected $collection_key = 'datasets';
protected $internal_gapi_mappings = array(
);
protected $datasetsType = 'Google_Service_Genomics_Dataset';
protected $datasetsDataType = 'array';
public $nextPageToken;
public function setDatasets($datasets)
{
$this->datasets = $datasets;
}
public function getDatasets()
{
return $this->datasets;
}
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
}
class Google_Service_Genomics_ListOperationsResponse extends Google_Collection
{
protected $collection_key = 'operations';
protected $internal_gapi_mappings = array(
);
public $nextPageToken;
protected $operationsType = 'Google_Service_Genomics_Operation';
protected $operationsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setOperations($operations)
{
$this->operations = $operations;
}
public function getOperations()
{
return $this->operations;
}
}
class Google_Service_Genomics_LogConfig extends Google_Model
{
protected $internal_gapi_mappings = array(
);
protected $cloudAuditType = 'Google_Service_Genomics_CloudAuditOptions';
protected $cloudAuditDataType = '';
protected $counterType = 'Google_Service_Genomics_CounterOptions';
protected $counterDataType = '';
protected $dataAccessType = 'Google_Service_Genomics_DataAccessOptions';
protected $dataAccessDataType = '';
public function setCloudAudit(Google_Service_Genomics_CloudAuditOptions $cloudAudit)
{
$this->cloudAudit = $cloudAudit;
}
public function getCloudAudit()
{
return $this->cloudAudit;
}
public function setCounter(Google_Service_Genomics_CounterOptions $counter)
{
$this->counter = $counter;
}
public function getCounter()
{
return $this->counter;
}
public function setDataAccess(Google_Service_Genomics_DataAccessOptions $dataAccess)
{
$this->dataAccess = $dataAccess;
}
public function getDataAccess()
{
return $this->dataAccess;
}
}
class Google_Service_Genomics_Operation extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $done;
protected $errorType = 'Google_Service_Genomics_Status';
protected $errorDataType = '';
public $metadata;
public $name;
public $response;
public function setDone($done)
{
$this->done = $done;
}
public function getDone()
{
return $this->done;
}
public function setError(Google_Service_Genomics_Status $error)
{
$this->error = $error;
}
public function getError()
{
return $this->error;
}
public function setMetadata($metadata)
{
$this->metadata = $metadata;
}
public function getMetadata()
{
return $this->metadata;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setResponse($response)
{
$this->response = $response;
}
public function getResponse()
{
return $this->response;
}
}
class Google_Service_Genomics_OperationEvent extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $description;
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
}
class Google_Service_Genomics_OperationMetadata extends Google_Collection
{
protected $collection_key = 'events';
protected $internal_gapi_mappings = array(
);
public $createTime;
protected $eventsType = 'Google_Service_Genomics_OperationEvent';
protected $eventsDataType = 'array';
public $projectId;
public $request;
public function setCreateTime($createTime)
{
$this->createTime = $createTime;
}
public function getCreateTime()
{
return $this->createTime;
}
public function setEvents($events)
{
$this->events = $events;
}
public function getEvents()
{
return $this->events;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setRequest($request)
{
$this->request = $request;
}
public function getRequest()
{
return $this->request;
}
}
class Google_Service_Genomics_Policy extends Google_Collection
{
protected $collection_key = 'rules';
protected $internal_gapi_mappings = array(
);
protected $bindingsType = 'Google_Service_Genomics_Binding';
protected $bindingsDataType = 'array';
public $etag;
protected $rulesType = 'Google_Service_Genomics_Rule';
protected $rulesDataType = 'array';
public $version;
public function setBindings($bindings)
{
$this->bindings = $bindings;
}
public function getBindings()
{
return $this->bindings;
}
public function setEtag($etag)
{
$this->etag = $etag;
}
public function getEtag()
{
return $this->etag;
}
public function setRules($rules)
{
$this->rules = $rules;
}
public function getRules()
{
return $this->rules;
}
public function setVersion($version)
{
$this->version = $version;
}
public function getVersion()
{
return $this->version;
}
}
class Google_Service_Genomics_Position extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $position;
public $referenceName;
public $reverseStrand;
public function setPosition($position)
{
$this->position = $position;
}
public function getPosition()
{
return $this->position;
}
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setReverseStrand($reverseStrand)
{
$this->reverseStrand = $reverseStrand;
}
public function getReverseStrand()
{
return $this->reverseStrand;
}
}
class Google_Service_Genomics_Program extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $commandLine;
public $id;
public $name;
public $prevProgramId;
public $version;
public function setCommandLine($commandLine)
{
$this->commandLine = $commandLine;
}
public function getCommandLine()
{
return $this->commandLine;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setPrevProgramId($prevProgramId)
{
$this->prevProgramId = $prevProgramId;
}
public function getPrevProgramId()
{
return $this->prevProgramId;
}
public function setVersion($version)
{
$this->version = $version;
}
public function getVersion()
{
return $this->version;
}
}
class Google_Service_Genomics_Range extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $end;
public $referenceName;
public $start;
public function setEnd($end)
{
$this->end = $end;
}
public function getEnd()
{
return $this->end;
}
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setStart($start)
{
$this->start = $start;
}
public function getStart()
{
return $this->start;
}
}
class Google_Service_Genomics_Read extends Google_Collection
{
protected $collection_key = 'alignedQuality';
protected $internal_gapi_mappings = array(
);
public $alignedQuality;
public $alignedSequence;
protected $alignmentType = 'Google_Service_Genomics_LinearAlignment';
protected $alignmentDataType = '';
public $duplicateFragment;
public $failedVendorQualityChecks;
public $fragmentLength;
public $fragmentName;
public $id;
public $info;
protected $nextMatePositionType = 'Google_Service_Genomics_Position';
protected $nextMatePositionDataType = '';
public $numberReads;
public $properPlacement;
public $readGroupId;
public $readGroupSetId;
public $readNumber;
public $secondaryAlignment;
public $supplementaryAlignment;
public function setAlignedQuality($alignedQuality)
{
$this->alignedQuality = $alignedQuality;
}
public function getAlignedQuality()
{
return $this->alignedQuality;
}
public function setAlignedSequence($alignedSequence)
{
$this->alignedSequence = $alignedSequence;
}
public function getAlignedSequence()
{
return $this->alignedSequence;
}
public function setAlignment(Google_Service_Genomics_LinearAlignment $alignment)
{
$this->alignment = $alignment;
}
public function getAlignment()
{
return $this->alignment;
}
public function setDuplicateFragment($duplicateFragment)
{
$this->duplicateFragment = $duplicateFragment;
}
public function getDuplicateFragment()
{
return $this->duplicateFragment;
}
public function setFailedVendorQualityChecks($failedVendorQualityChecks)
{
$this->failedVendorQualityChecks = $failedVendorQualityChecks;
}
public function getFailedVendorQualityChecks()
{
return $this->failedVendorQualityChecks;
}
public function setFragmentLength($fragmentLength)
{
$this->fragmentLength = $fragmentLength;
}
public function getFragmentLength()
{
return $this->fragmentLength;
}
public function setFragmentName($fragmentName)
{
$this->fragmentName = $fragmentName;
}
public function getFragmentName()
{
return $this->fragmentName;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setNextMatePosition(Google_Service_Genomics_Position $nextMatePosition)
{
$this->nextMatePosition = $nextMatePosition;
}
public function getNextMatePosition()
{
return $this->nextMatePosition;
}
public function setNumberReads($numberReads)
{
$this->numberReads = $numberReads;
}
public function getNumberReads()
{
return $this->numberReads;
}
public function setProperPlacement($properPlacement)
{
$this->properPlacement = $properPlacement;
}
public function getProperPlacement()
{
return $this->properPlacement;
}
public function setReadGroupId($readGroupId)
{
$this->readGroupId = $readGroupId;
}
public function getReadGroupId()
{
return $this->readGroupId;
}
public function setReadGroupSetId($readGroupSetId)
{
$this->readGroupSetId = $readGroupSetId;
}
public function getReadGroupSetId()
{
return $this->readGroupSetId;
}
public function setReadNumber($readNumber)
{
$this->readNumber = $readNumber;
}
public function getReadNumber()
{
return $this->readNumber;
}
public function setSecondaryAlignment($secondaryAlignment)
{
$this->secondaryAlignment = $secondaryAlignment;
}
public function getSecondaryAlignment()
{
return $this->secondaryAlignment;
}
public function setSupplementaryAlignment($supplementaryAlignment)
{
$this->supplementaryAlignment = $supplementaryAlignment;
}
public function getSupplementaryAlignment()
{
return $this->supplementaryAlignment;
}
}
class Google_Service_Genomics_ReadGroup extends Google_Collection
{
protected $collection_key = 'programs';
protected $internal_gapi_mappings = array(
);
public $datasetId;
public $description;
protected $experimentType = 'Google_Service_Genomics_Experiment';
protected $experimentDataType = '';
public $id;
public $info;
public $name;
public $predictedInsertSize;
protected $programsType = 'Google_Service_Genomics_Program';
protected $programsDataType = 'array';
public $referenceSetId;
public $sampleId;
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
public function setExperiment(Google_Service_Genomics_Experiment $experiment)
{
$this->experiment = $experiment;
}
public function getExperiment()
{
return $this->experiment;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setPredictedInsertSize($predictedInsertSize)
{
$this->predictedInsertSize = $predictedInsertSize;
}
public function getPredictedInsertSize()
{
return $this->predictedInsertSize;
}
public function setPrograms($programs)
{
$this->programs = $programs;
}
public function getPrograms()
{
return $this->programs;
}
public function setReferenceSetId($referenceSetId)
{
$this->referenceSetId = $referenceSetId;
}
public function getReferenceSetId()
{
return $this->referenceSetId;
}
public function setSampleId($sampleId)
{
$this->sampleId = $sampleId;
}
public function getSampleId()
{
return $this->sampleId;
}
}
class Google_Service_Genomics_ReadGroupSet extends Google_Collection
{
protected $collection_key = 'readGroups';
protected $internal_gapi_mappings = array(
);
public $datasetId;
public $filename;
public $id;
public $info;
public $name;
protected $readGroupsType = 'Google_Service_Genomics_ReadGroup';
protected $readGroupsDataType = 'array';
public $referenceSetId;
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setFilename($filename)
{
$this->filename = $filename;
}
public function getFilename()
{
return $this->filename;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setReadGroups($readGroups)
{
$this->readGroups = $readGroups;
}
public function getReadGroups()
{
return $this->readGroups;
}
public function setReferenceSetId($referenceSetId)
{
$this->referenceSetId = $referenceSetId;
}
public function getReferenceSetId()
{
return $this->referenceSetId;
}
}
class Google_Service_Genomics_Reference extends Google_Collection
{
protected $collection_key = 'sourceAccessions';
protected $internal_gapi_mappings = array(
);
public $id;
public $length;
public $md5checksum;
public $name;
public $ncbiTaxonId;
public $sourceAccessions;
public $sourceUri;
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setLength($length)
{
$this->length = $length;
}
public function getLength()
{
return $this->length;
}
public function setMd5checksum($md5checksum)
{
$this->md5checksum = $md5checksum;
}
public function getMd5checksum()
{
return $this->md5checksum;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setNcbiTaxonId($ncbiTaxonId)
{
$this->ncbiTaxonId = $ncbiTaxonId;
}
public function getNcbiTaxonId()
{
return $this->ncbiTaxonId;
}
public function setSourceAccessions($sourceAccessions)
{
$this->sourceAccessions = $sourceAccessions;
}
public function getSourceAccessions()
{
return $this->sourceAccessions;
}
public function setSourceUri($sourceUri)
{
$this->sourceUri = $sourceUri;
}
public function getSourceUri()
{
return $this->sourceUri;
}
}
class Google_Service_Genomics_ReferenceBound extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $referenceName;
public $upperBound;
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setUpperBound($upperBound)
{
$this->upperBound = $upperBound;
}
public function getUpperBound()
{
return $this->upperBound;
}
}
class Google_Service_Genomics_ReferenceSet extends Google_Collection
{
protected $collection_key = 'sourceAccessions';
protected $internal_gapi_mappings = array(
);
public $assemblyId;
public $description;
public $id;
public $md5checksum;
public $ncbiTaxonId;
public $referenceIds;
public $sourceAccessions;
public $sourceUri;
public function setAssemblyId($assemblyId)
{
$this->assemblyId = $assemblyId;
}
public function getAssemblyId()
{
return $this->assemblyId;
}
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setMd5checksum($md5checksum)
{
$this->md5checksum = $md5checksum;
}
public function getMd5checksum()
{
return $this->md5checksum;
}
public function setNcbiTaxonId($ncbiTaxonId)
{
$this->ncbiTaxonId = $ncbiTaxonId;
}
public function getNcbiTaxonId()
{
return $this->ncbiTaxonId;
}
public function setReferenceIds($referenceIds)
{
$this->referenceIds = $referenceIds;
}
public function getReferenceIds()
{
return $this->referenceIds;
}
public function setSourceAccessions($sourceAccessions)
{
$this->sourceAccessions = $sourceAccessions;
}
public function getSourceAccessions()
{
return $this->sourceAccessions;
}
public function setSourceUri($sourceUri)
{
$this->sourceUri = $sourceUri;
}
public function getSourceUri()
{
return $this->sourceUri;
}
}
class Google_Service_Genomics_Rule extends Google_Collection
{
protected $collection_key = 'permissions';
protected $internal_gapi_mappings = array(
);
public $action;
protected $conditionsType = 'Google_Service_Genomics_Condition';
protected $conditionsDataType = 'array';
public $description;
public $in;
protected $logConfigType = 'Google_Service_Genomics_LogConfig';
protected $logConfigDataType = 'array';
public $notIn;
public $permissions;
public function setAction($action)
{
$this->action = $action;
}
public function getAction()
{
return $this->action;
}
public function setConditions($conditions)
{
$this->conditions = $conditions;
}
public function getConditions()
{
return $this->conditions;
}
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
public function setIn($in)
{
$this->in = $in;
}
public function getIn()
{
return $this->in;
}
public function setLogConfig($logConfig)
{
$this->logConfig = $logConfig;
}
public function getLogConfig()
{
return $this->logConfig;
}
public function setNotIn($notIn)
{
$this->notIn = $notIn;
}
public function getNotIn()
{
return $this->notIn;
}
public function setPermissions($permissions)
{
$this->permissions = $permissions;
}
public function getPermissions()
{
return $this->permissions;
}
}
class Google_Service_Genomics_SearchCallSetsRequest extends Google_Collection
{
protected $collection_key = 'variantSetIds';
protected $internal_gapi_mappings = array(
);
public $name;
public $pageSize;
public $pageToken;
public $variantSetIds;
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setPageSize($pageSize)
{
$this->pageSize = $pageSize;
}
public function getPageSize()
{
return $this->pageSize;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
public function setVariantSetIds($variantSetIds)
{
$this->variantSetIds = $variantSetIds;
}
public function getVariantSetIds()
{
return $this->variantSetIds;
}
}
class Google_Service_Genomics_SearchCallSetsResponse extends Google_Collection
{
protected $collection_key = 'callSets';
protected $internal_gapi_mappings = array(
);
protected $callSetsType = 'Google_Service_Genomics_CallSet';
protected $callSetsDataType = 'array';
public $nextPageToken;
public function setCallSets($callSets)
{
$this->callSets = $callSets;
}
public function getCallSets()
{
return $this->callSets;
}
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
}
class Google_Service_Genomics_SearchReadGroupSetsRequest extends Google_Collection
{
protected $collection_key = 'datasetIds';
protected $internal_gapi_mappings = array(
);
public $datasetIds;
public $name;
public $pageSize;
public $pageToken;
public function setDatasetIds($datasetIds)
{
$this->datasetIds = $datasetIds;
}
public function getDatasetIds()
{
return $this->datasetIds;
}
public function setName($name)
{
$this->name = $name;
}
public function getName()
{
return $this->name;
}
public function setPageSize($pageSize)
{
$this->pageSize = $pageSize;
}
public function getPageSize()
{
return $this->pageSize;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
}
class Google_Service_Genomics_SearchReadGroupSetsResponse extends Google_Collection
{
protected $collection_key = 'readGroupSets';
protected $internal_gapi_mappings = array(
);
public $nextPageToken;
protected $readGroupSetsType = 'Google_Service_Genomics_ReadGroupSet';
protected $readGroupSetsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setReadGroupSets($readGroupSets)
{
$this->readGroupSets = $readGroupSets;
}
public function getReadGroupSets()
{
return $this->readGroupSets;
}
}
class Google_Service_Genomics_SearchReadsRequest extends Google_Collection
{
protected $collection_key = 'readGroupSetIds';
protected $internal_gapi_mappings = array(
);
public $end;
public $pageSize;
public $pageToken;
public $readGroupIds;
public $readGroupSetIds;
public $referenceName;
public $start;
public function setEnd($end)
{
$this->end = $end;
}
public function getEnd()
{
return $this->end;
}
public function setPageSize($pageSize)
{
$this->pageSize = $pageSize;
}
public function getPageSize()
{
return $this->pageSize;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
public function setReadGroupIds($readGroupIds)
{
$this->readGroupIds = $readGroupIds;
}
public function getReadGroupIds()
{
return $this->readGroupIds;
}
public function setReadGroupSetIds($readGroupSetIds)
{
$this->readGroupSetIds = $readGroupSetIds;
}
public function getReadGroupSetIds()
{
return $this->readGroupSetIds;
}
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setStart($start)
{
$this->start = $start;
}
public function getStart()
{
return $this->start;
}
}
class Google_Service_Genomics_SearchReadsResponse extends Google_Collection
{
protected $collection_key = 'alignments';
protected $internal_gapi_mappings = array(
);
protected $alignmentsType = 'Google_Service_Genomics_Read';
protected $alignmentsDataType = 'array';
public $nextPageToken;
public function setAlignments($alignments)
{
$this->alignments = $alignments;
}
public function getAlignments()
{
return $this->alignments;
}
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
}
class Google_Service_Genomics_SearchReferenceSetsRequest extends Google_Collection
{
protected $collection_key = 'md5checksums';
protected $internal_gapi_mappings = array(
);
public $accessions;
public $assemblyId;
public $md5checksums;
public $pageSize;
public $pageToken;
public function setAccessions($accessions)
{
$this->accessions = $accessions;
}
public function getAccessions()
{
return $this->accessions;
}
public function setAssemblyId($assemblyId)
{
$this->assemblyId = $assemblyId;
}
public function getAssemblyId()
{
return $this->assemblyId;
}
public function setMd5checksums($md5checksums)
{
$this->md5checksums = $md5checksums;
}
public function getMd5checksums()
{
return $this->md5checksums;
}
public function setPageSize($pageSize)
{
$this->pageSize = $pageSize;
}
public function getPageSize()
{
return $this->pageSize;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
}
class Google_Service_Genomics_SearchReferenceSetsResponse extends Google_Collection
{
protected $collection_key = 'referenceSets';
protected $internal_gapi_mappings = array(
);
public $nextPageToken;
protected $referenceSetsType = 'Google_Service_Genomics_ReferenceSet';
protected $referenceSetsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setReferenceSets($referenceSets)
{
$this->referenceSets = $referenceSets;
}
public function getReferenceSets()
{
return $this->referenceSets;
}
}
class Google_Service_Genomics_SearchReferencesRequest extends Google_Collection
{
protected $collection_key = 'md5checksums';
protected $internal_gapi_mappings = array(
);
public $accessions;
public $md5checksums;
public $pageSize;
public $pageToken;
public $referenceSetId;
public function setAccessions($accessions)
{
$this->accessions = $accessions;
}
public function getAccessions()
{
return $this->accessions;
}
public function setMd5checksums($md5checksums)
{
$this->md5checksums = $md5checksums;
}
public function getMd5checksums()
{
return $this->md5checksums;
}
public function setPageSize($pageSize)
{
$this->pageSize = $pageSize;
}
public function getPageSize()
{
return $this->pageSize;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
public function setReferenceSetId($referenceSetId)
{
$this->referenceSetId = $referenceSetId;
}
public function getReferenceSetId()
{
return $this->referenceSetId;
}
}
class Google_Service_Genomics_SearchReferencesResponse extends Google_Collection
{
protected $collection_key = 'references';
protected $internal_gapi_mappings = array(
);
public $nextPageToken;
protected $referencesType = 'Google_Service_Genomics_Reference';
protected $referencesDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setReferences($references)
{
$this->references = $references;
}
public function getReferences()
{
return $this->references;
}
}
class Google_Service_Genomics_SearchVariantSetsRequest extends Google_Collection
{
protected $collection_key = 'datasetIds';
protected $internal_gapi_mappings = array(
);
public $datasetIds;
public $pageSize;
public $pageToken;
public function setDatasetIds($datasetIds)
{
$this->datasetIds = $datasetIds;
}
public function getDatasetIds()
{
return $this->datasetIds;
}
public function setPageSize($pageSize)
{
$this->pageSize = $pageSize;
}
public function getPageSize()
{
return $this->pageSize;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
}
class Google_Service_Genomics_SearchVariantSetsResponse extends Google_Collection
{
protected $collection_key = 'variantSets';
protected $internal_gapi_mappings = array(
);
public $nextPageToken;
protected $variantSetsType = 'Google_Service_Genomics_VariantSet';
protected $variantSetsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setVariantSets($variantSets)
{
$this->variantSets = $variantSets;
}
public function getVariantSets()
{
return $this->variantSets;
}
}
class Google_Service_Genomics_SearchVariantsRequest extends Google_Collection
{
protected $collection_key = 'variantSetIds';
protected $internal_gapi_mappings = array(
);
public $callSetIds;
public $end;
public $maxCalls;
public $pageSize;
public $pageToken;
public $referenceName;
public $start;
public $variantName;
public $variantSetIds;
public function setCallSetIds($callSetIds)
{
$this->callSetIds = $callSetIds;
}
public function getCallSetIds()
{
return $this->callSetIds;
}
public function setEnd($end)
{
$this->end = $end;
}
public function getEnd()
{
return $this->end;
}
public function setMaxCalls($maxCalls)
{
$this->maxCalls = $maxCalls;
}
public function getMaxCalls()
{
return $this->maxCalls;
}
public function setPageSize($pageSize)
{
$this->pageSize = $pageSize;
}
public function getPageSize()
{
return $this->pageSize;
}
public function setPageToken($pageToken)
{
$this->pageToken = $pageToken;
}
public function getPageToken()
{
return $this->pageToken;
}
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setStart($start)
{
$this->start = $start;
}
public function getStart()
{
return $this->start;
}
public function setVariantName($variantName)
{
$this->variantName = $variantName;
}
public function getVariantName()
{
return $this->variantName;
}
public function setVariantSetIds($variantSetIds)
{
$this->variantSetIds = $variantSetIds;
}
public function getVariantSetIds()
{
return $this->variantSetIds;
}
}
class Google_Service_Genomics_SearchVariantsResponse extends Google_Collection
{
protected $collection_key = 'variants';
protected $internal_gapi_mappings = array(
);
public $nextPageToken;
protected $variantsType = 'Google_Service_Genomics_Variant';
protected $variantsDataType = 'array';
public function setNextPageToken($nextPageToken)
{
$this->nextPageToken = $nextPageToken;
}
public function getNextPageToken()
{
return $this->nextPageToken;
}
public function setVariants($variants)
{
$this->variants = $variants;
}
public function getVariants()
{
return $this->variants;
}
}
class Google_Service_Genomics_SetIamPolicyRequest extends Google_Model
{
protected $internal_gapi_mappings = array(
);
protected $policyType = 'Google_Service_Genomics_Policy';
protected $policyDataType = '';
public function setPolicy(Google_Service_Genomics_Policy $policy)
{
$this->policy = $policy;
}
public function getPolicy()
{
return $this->policy;
}
}
class Google_Service_Genomics_Status extends Google_Collection
{
protected $collection_key = 'details';
protected $internal_gapi_mappings = array(
);
public $code;
public $details;
public $message;
public function setCode($code)
{
$this->code = $code;
}
public function getCode()
{
return $this->code;
}
public function setDetails($details)
{
$this->details = $details;
}
public function getDetails()
{
return $this->details;
}
public function setMessage($message)
{
$this->message = $message;
}
public function getMessage()
{
return $this->message;
}
}
class Google_Service_Genomics_StreamReadsRequest extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $end;
public $projectId;
public $readGroupSetId;
public $referenceName;
public $start;
public function setEnd($end)
{
$this->end = $end;
}
public function getEnd()
{
return $this->end;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setReadGroupSetId($readGroupSetId)
{
$this->readGroupSetId = $readGroupSetId;
}
public function getReadGroupSetId()
{
return $this->readGroupSetId;
}
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setStart($start)
{
$this->start = $start;
}
public function getStart()
{
return $this->start;
}
}
class Google_Service_Genomics_StreamReadsResponse extends Google_Collection
{
protected $collection_key = 'alignments';
protected $internal_gapi_mappings = array(
);
protected $alignmentsType = 'Google_Service_Genomics_Read';
protected $alignmentsDataType = 'array';
public function setAlignments($alignments)
{
$this->alignments = $alignments;
}
public function getAlignments()
{
return $this->alignments;
}
}
class Google_Service_Genomics_StreamVariantsRequest extends Google_Collection
{
protected $collection_key = 'callSetIds';
protected $internal_gapi_mappings = array(
);
public $callSetIds;
public $end;
public $projectId;
public $referenceName;
public $start;
public $variantSetId;
public function setCallSetIds($callSetIds)
{
$this->callSetIds = $callSetIds;
}
public function getCallSetIds()
{
return $this->callSetIds;
}
public function setEnd($end)
{
$this->end = $end;
}
public function getEnd()
{
return $this->end;
}
public function setProjectId($projectId)
{
$this->projectId = $projectId;
}
public function getProjectId()
{
return $this->projectId;
}
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setStart($start)
{
$this->start = $start;
}
public function getStart()
{
return $this->start;
}
public function setVariantSetId($variantSetId)
{
$this->variantSetId = $variantSetId;
}
public function getVariantSetId()
{
return $this->variantSetId;
}
}
class Google_Service_Genomics_StreamVariantsResponse extends Google_Collection
{
protected $collection_key = 'variants';
protected $internal_gapi_mappings = array(
);
protected $variantsType = 'Google_Service_Genomics_Variant';
protected $variantsDataType = 'array';
public function setVariants($variants)
{
$this->variants = $variants;
}
public function getVariants()
{
return $this->variants;
}
}
class Google_Service_Genomics_TestIamPermissionsRequest extends Google_Collection
{
protected $collection_key = 'permissions';
protected $internal_gapi_mappings = array(
);
public $permissions;
public function setPermissions($permissions)
{
$this->permissions = $permissions;
}
public function getPermissions()
{
return $this->permissions;
}
}
class Google_Service_Genomics_TestIamPermissionsResponse extends Google_Collection
{
protected $collection_key = 'permissions';
protected $internal_gapi_mappings = array(
);
public $permissions;
public function setPermissions($permissions)
{
$this->permissions = $permissions;
}
public function getPermissions()
{
return $this->permissions;
}
}
class Google_Service_Genomics_UndeleteDatasetRequest extends Google_Model
{
}
class Google_Service_Genomics_Variant extends Google_Collection
{
protected $collection_key = 'names';
protected $internal_gapi_mappings = array(
);
public $alternateBases;
protected $callsType = 'Google_Service_Genomics_VariantCall';
protected $callsDataType = 'array';
public $created;
public $end;
public $filter;
public $id;
public $info;
public $names;
public $quality;
public $referenceBases;
public $referenceName;
public $start;
public $variantSetId;
public function setAlternateBases($alternateBases)
{
$this->alternateBases = $alternateBases;
}
public function getAlternateBases()
{
return $this->alternateBases;
}
public function setCalls($calls)
{
$this->calls = $calls;
}
public function getCalls()
{
return $this->calls;
}
public function setCreated($created)
{
$this->created = $created;
}
public function getCreated()
{
return $this->created;
}
public function setEnd($end)
{
$this->end = $end;
}
public function getEnd()
{
return $this->end;
}
public function setFilter($filter)
{
$this->filter = $filter;
}
public function getFilter()
{
return $this->filter;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setNames($names)
{
$this->names = $names;
}
public function getNames()
{
return $this->names;
}
public function setQuality($quality)
{
$this->quality = $quality;
}
public function getQuality()
{
return $this->quality;
}
public function setReferenceBases($referenceBases)
{
$this->referenceBases = $referenceBases;
}
public function getReferenceBases()
{
return $this->referenceBases;
}
public function setReferenceName($referenceName)
{
$this->referenceName = $referenceName;
}
public function getReferenceName()
{
return $this->referenceName;
}
public function setStart($start)
{
$this->start = $start;
}
public function getStart()
{
return $this->start;
}
public function setVariantSetId($variantSetId)
{
$this->variantSetId = $variantSetId;
}
public function getVariantSetId()
{
return $this->variantSetId;
}
}
class Google_Service_Genomics_VariantCall extends Google_Collection
{
protected $collection_key = 'genotypeLikelihood';
protected $internal_gapi_mappings = array(
);
public $callSetId;
public $callSetName;
public $genotype;
public $genotypeLikelihood;
public $info;
public $phaseset;
public function setCallSetId($callSetId)
{
$this->callSetId = $callSetId;
}
public function getCallSetId()
{
return $this->callSetId;
}
public function setCallSetName($callSetName)
{
$this->callSetName = $callSetName;
}
public function getCallSetName()
{
return $this->callSetName;
}
public function setGenotype($genotype)
{
$this->genotype = $genotype;
}
public function getGenotype()
{
return $this->genotype;
}
public function setGenotypeLikelihood($genotypeLikelihood)
{
$this->genotypeLikelihood = $genotypeLikelihood;
}
public function getGenotypeLikelihood()
{
return $this->genotypeLikelihood;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setPhaseset($phaseset)
{
$this->phaseset = $phaseset;
}
public function getPhaseset()
{
return $this->phaseset;
}
}
class Google_Service_Genomics_VariantSet extends Google_Collection
{
protected $collection_key = 'referenceBounds';
protected $internal_gapi_mappings = array(
);
public $datasetId;
public $id;
protected $metadataType = 'Google_Service_Genomics_VariantSetMetadata';
protected $metadataDataType = 'array';
protected $referenceBoundsType = 'Google_Service_Genomics_ReferenceBound';
protected $referenceBoundsDataType = 'array';
public $referenceSetId;
public function setDatasetId($datasetId)
{
$this->datasetId = $datasetId;
}
public function getDatasetId()
{
return $this->datasetId;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setMetadata($metadata)
{
$this->metadata = $metadata;
}
public function getMetadata()
{
return $this->metadata;
}
public function setReferenceBounds($referenceBounds)
{
$this->referenceBounds = $referenceBounds;
}
public function getReferenceBounds()
{
return $this->referenceBounds;
}
public function setReferenceSetId($referenceSetId)
{
$this->referenceSetId = $referenceSetId;
}
public function getReferenceSetId()
{
return $this->referenceSetId;
}
}
class Google_Service_Genomics_VariantSetMetadata extends Google_Model
{
protected $internal_gapi_mappings = array(
);
public $description;
public $id;
public $info;
public $key;
public $number;
public $type;
public $value;
public function setDescription($description)
{
$this->description = $description;
}
public function getDescription()
{
return $this->description;
}
public function setId($id)
{
$this->id = $id;
}
public function getId()
{
return $this->id;
}
public function setInfo($info)
{
$this->info = $info;
}
public function getInfo()
{
return $this->info;
}
public function setKey($key)
{
$this->key = $key;
}
public function getKey()
{
return $this->key;
}
public function setNumber($number)
{
$this->number = $number;
}
public function getNumber()
{
return $this->number;
}
public function setType($type)
{
$this->type = $type;
}
public function getType()
{
return $this->type;
}
public function setValue($value)
{
$this->value = $value;
}
public function getValue()
{
return $this->value;
}
}
Sindbad File Manager Version 1.0, Coded By Sindbad EG ~ The Terrorists